SubtiBank SubtiBank
yxjO [2019-09-03 09:28:28]
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yxjO [2019-09-03 09:28:28]

similar to transcriptional regulator ([SW|LysR family])
locus
BSU_38880
pI
6.55
mw
33.28 kDa
protein length
291 aa Sequence Blast
gene length
876 bp Sequence Blast
function
unknown
product
transcriptional regulator ([SW|LysR family])
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    3,991,718 → 3,992,593

    The protein

    Protein family

  • [SW|LysR family] (according to UniProt)

    • Structure

  • [PDB|5Y2V] (from Synechocystic sp., 28% identity) [pubmed|29279392]

    • Biological materials

    Mutant

  • MGNA-B735 (yxjO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1734 NBRP B. subtilis, Japan]
  • BKE38880 (Δ[gene|B2EEA70E07C0E116F2FF2C00F17B7149DD356122|yxjO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGAAATATCTCCTTCACT, downstream forward: _UP4_TAGAGCTGAAAAATCAATCT
  • BKK38880 (Δ[gene|B2EEA70E07C0E116F2FF2C00F17B7149DD356122|yxjO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGAAATATCTCCTTCACT, downstream forward: _UP4_TAGAGCTGAAAAATCAATCT

    • References

    Research papers

  • 29279392